Tantin Laboratory: Useful Links

 

Biomedical Research Tools and Links:


Basic Tools

Enztrez PubMed gateway site

NIH Computational Biology Desk Reference

BCM Search Launcher--Sequence Utilities

ISI Web of Knowledge


Genomics web research tools

ENSEMBL genome browser

MGI databank

The I.M.A.G.E. Consortium

UCSC genome site ("The Golden Path")


Bioinformatics links

FatiGO gene ontogeny

GO Miner (NCI)

iHOP information hyperlinked over proteins

Oncomine cancer microarray database

Human Mutation Database (must register)

MEME (SDSC)

The Gibbs Motif Sampler

PipMaker

GSEA: Gene Set Enrichment Analysis


Expression/developmental web pages

GNF SymAtlas

GenePaint

Oncogenomics Normal Tissue Gene Expression Database

The Caltech uMRI Alas of Mouse Development

The Edinburgh Mouse Atlas Project


Motif/domain/target site identification pages

Scansite

WebLogo (Berkeley)

NetPhos

Pfam HMM motif search (moved to Janelia)

Pfam (Sanger) (seems like the superior site)

Superfamily sequence search

PSSM fold recognition software


Protein domain/proteomics pages

SDSC proteinexplorer front door

RCSB PDB protein data bank

ExPASy Proteomics Server

UCSF ProteinProspector

PredictProtein Server (EMBL-Heidelberg)


Transcription factor pages

Rockefeller's transcription regulator gene name list

TESS (Transcription Element Seach System) at U Penn

TFSEARCH (damn good)

BIOBASE (contains TRANSFAC and PROTEOME, no longer free)


Ig, TCR, MHC

IMGT Homepage


Sequence alignment

LALIGN server

ClustalW

BOXSHADE

Blocks


Database homology searches

BLAST

BLAT

Eukaryotic Promoter Database


Mouse models

Mouse Models of Human Cancers Consortium

IGTC

Bay Genomics

Jax Mouse Model Database

Taconic Mouse Model Database

2006 Charles River Mouse Models (.pdf)

Biomedical Journals:


Nature Genetics

Cell

Nature

Nature Medicine

Nature Immunology

Science

Molecular Cell

Cancer Cell

Immunity

Genes & Development

Neuron

Nature Cell Biology

Cell Stem Cell

Stem Cells

Cell Metabolism

Nature Biotechnology

Nature Structural & Molecular Biology

PLoS Biology

PLoS Medicine

Journal of Experimental Medicine

The EMBO Journal

Genome Research

Molecular and Cellular Biology

Currrent Biology

Cancer Research

Oncogene

PNAS

Journal of Immunology

RNA

Nature Biotechnology

The Journal of Biological Chemistry

Nucleic Acids Research

 

Review Journals:


Annual Review of Immunology

Annual Review of Biochemistry

Current Opinion in Cell Biology

Annual Review of Cell and Developmental Biology

TiBS

 

University of Utah Links :


Campus Directory

Eccles Health Science Library

Eccles Electronic Journals

Bioscience Calendar

Gene Regulation JC Schedule

Pathology Home Page

Cell Biology & Immunology

Pathology R.I.P. + J.C.

Pathology Event Calendar

HSC Core Facilities

Molecular Biology Graduate Program

MD/PhD Combined Program

University of Utah Medical School Student Research Program

Emma Eccles Jones Medical Research Building (A.K.A. EEJ, EEJB, JMRB, JMSB, EEJMRB, EEJR, EEJMS, Building 565, the Biochemistry Building and 15 N Medical Dr East)

 

External Links :


ERA Commons

RePORT Expenditures and Results (RePORTER) query tool

Study Section Roster (N.I.H.)